{
  "_id": "6a107a14acfb0bcc41cad9c2",
  "Package": "COMIX",
  "Type": "Package",
  "Title": "Coarsened Mixtures of Hierarchical Skew Kernels",
  "Version": "1.0.2",
  "Authors@R": "c(person(\"S.\", \"Gorsky\", role = c(\"aut\", \"cre\"),\nemail = \"sgorsky@umass.edu\"),\nperson(\"C.\", \"Chan\", role = \"ctb\",\nemail = \"cliburn.chan@duke.edu\"),\nperson(\"L.\", \"Ma\", role = \"ctb\",\nemail = \"li.ma@duke.edu\"))",
  "Description": "Bayesian fit of a Dirichlet Process Mixture with\nhierarchical multivariate skew normal kernels and coarsened\nposteriors. For more information, see Gorsky, Chan and Ma\n(2024) <doi:10.1214/22-BA1356>.",
  "License": "CC0",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.3",
  "VignetteBuilder": "R.rsp",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-05-06 08:16:10 UTC",
    "User": "root"
  },
  "Author": "S. Gorsky [aut, cre], C. Chan [ctb], L. Ma [ctb]",
  "Maintainer": "S. Gorsky <sgorsky@umass.edu>",
  "Config/pak/sysreqs": "libicu-dev",
  "Repository": "https://shgrky.r-universe.dev",
  "Date/Publication": "2026-02-05 07:29:40 UTC",
  "RemoteUrl": "https://github.com/cran/COMIX",
  "RemoteRef": "HEAD",
  "RemoteSha": "ee8564e063f61709b2dc3a0560198469f3168ef6",
  "MD5sum": "fe3555208d8fa18877295098c1c58b3b",
  "_user": "shgrky",
  "_type": "src",
  "_file": "COMIX_1.0.2.tar.gz",
  "_fileid": "281f307eaab6b8bc8986ef9ab01616c350c603f8b079ded72389a579f6369081",
  "_filesize": 1549833,
  "_sha256": "281f307eaab6b8bc8986ef9ab01616c350c603f8b079ded72389a579f6369081",
  "_created": "2026-05-06T08:16:10.000Z",
  "_published": "2026-05-22T15:45:24.737Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77413564767,
      "time": 202,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6825631511"
    },
    {
      "job": 77413564875,
      "time": 184,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6825627077"
    },
    {
      "job": 77413565461,
      "time": 215,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6825634813"
    },
    {
      "job": 77413565064,
      "time": 199,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6825631140"
    },
    {
      "job": 77413565401,
      "time": 190,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6825622187"
    },
    {
      "job": 77413565241,
      "time": 425,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6825679813"
    },
    {
      "job": 77413565046,
      "time": 236,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6825630064"
    },
    {
      "job": 77413565240,
      "time": 511,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6825695204"
    },
    {
      "job": 77413564357,
      "time": 272,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6825578891"
    },
    {
      "job": 77413564347,
      "time": 139,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7164607331"
    },
    {
      "job": 77413564596,
      "time": 215,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6825634921"
    },
    {
      "job": 77413564745,
      "time": 185,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6825627475"
    },
    {
      "job": 77413564715,
      "time": 190,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6825628642"
    }
  ],
  "_buildurl": "https://github.com/r-universe/shgrky/actions/runs/25423941426",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/COMIX",
  "_commit": {
    "id": "ee8564e063f61709b2dc3a0560198469f3168ef6",
    "author": "S. Gorsky <sgorsky@umass.edu>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.0.2\n",
    "time": 1770276580
  },
  "_maintainer": {
    "name": "S. Gorsky",
    "email": "sgorsky@umass.edu",
    "login": "shgrky",
    "uuid": 21222544
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "RcppArmadillo",
      "role": "LinkingTo"
    },
    {
      "package": "RcppEigen",
      "role": "LinkingTo"
    },
    {
      "package": "RcppNumerical",
      "role": "LinkingTo"
    },
    {
      "package": "Rcpp",
      "version": ">= 0.12.18",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "coda",
      "role": "Imports"
    },
    {
      "package": "tidyr",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "sn",
      "role": "Suggests"
    },
    {
      "package": "R.rsp",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-46",
      "n": 1
    },
    {
      "week": "2026-06",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "1.0.1",
      "date": "2025-11-12"
    },
    {
      "name": "1.0.2",
      "date": "2026-02-05"
    }
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "shgrky",
      "count": 5,
      "uuid": 21222544
    }
  ],
  "_userbio": {
    "uuid": 21222544,
    "type": "user",
    "name": "shgrky"
  },
  "_downloads": {
    "count": 260,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/COMIX"
  },
  "_searchresults": 29,
  "_topics": [
    "openblas",
    "cpp",
    "openmp"
  ],
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/COMIX.html",
    "extra/contents.json",
    "manual.pdf"
  ],
  "_realowner": "shgrky",
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.1.4",
      "date": "2022-05-10"
    },
    {
      "version": "0.1.6",
      "date": "2022-05-13"
    },
    {
      "version": "1.0.0",
      "date": "2022-11-23"
    },
    {
      "version": "1.0.1",
      "date": "2025-11-12"
    },
    {
      "version": "1.0.2",
      "date": "2026-02-05"
    }
  ],
  "_exports": [
    "acfParams",
    "calibrate",
    "calibrateNoDist",
    "comix",
    "effectiveSampleSize",
    "gewekeParams",
    "heidelParams",
    "plotEffectiveSampleSize",
    "plotGewekeParams",
    "plotHeidelParams",
    "plotTracePlots",
    "relabelChain",
    "summarizeChain",
    "tidyChain",
    "transform_params"
  ],
  "_help": [
    {
      "page": "acfParams",
      "title": "The function computes (and by default plots) estimates of the autocovariance or autocorrelation function for the different parameters of the model. This is a wrapper for coda::acf.",
      "topics": [
        "acfParams"
      ]
    },
    {
      "page": "calibrate",
      "title": "This function aligns multiple samples so that their location parameters are equal.",
      "topics": [
        "calibrate"
      ]
    },
    {
      "page": "calibrateNoDist",
      "title": "This function aligns multiple samples so that their location parameters are equal.",
      "topics": [
        "calibrateNoDist"
      ]
    },
    {
      "page": "comix",
      "title": "This function generates a sample from the posterior of COMIX.",
      "topics": [
        "comix"
      ]
    },
    {
      "page": "effectiveSampleSize",
      "title": "This function creates an object that summarizes the effective sample size for the parameters of the model.",
      "topics": [
        "effectiveSampleSize"
      ]
    },
    {
      "page": "gewekeParams",
      "title": "This function creates an object that summarizes the Geweke convergence diagnostic.",
      "topics": [
        "gewekeParams"
      ]
    },
    {
      "page": "heidelParams",
      "title": "This function creates an object that summarizes the Heidelberg-Welch convergence diagnostic.",
      "topics": [
        "heidelParams"
      ]
    },
    {
      "page": "plotEffectiveSampleSize",
      "title": "This function creates plots for the effective sample size for the parameters of the model.",
      "topics": [
        "plotEffectiveSampleSize"
      ]
    },
    {
      "page": "plotGewekeParams",
      "title": "This function creates plots for the Geweke diagnostic and results of test of stationarity for the parameters of the model.",
      "topics": [
        "plotGewekeParams"
      ]
    },
    {
      "page": "plotHeidelParams",
      "title": "This function creates plots for the Heidelberg-Welch diagnostic and results of test of stationarity for the parameters of the model.",
      "topics": [
        "plotHeidelParams"
      ]
    },
    {
      "page": "plotTracePlots",
      "title": "This function creates trace plots for different parameters of the MCMC chain.",
      "topics": [
        "plotTracePlots"
      ]
    },
    {
      "page": "relabelChain",
      "title": "This function relabels the chain to avoid label switching issues.",
      "topics": [
        "relabelChain"
      ]
    },
    {
      "page": "summarizeChain",
      "title": "This function provides post-hoc estimates of the model parameters.",
      "topics": [
        "summarizeChain"
      ]
    },
    {
      "page": "tidyChain",
      "title": "This function creates tidy versions of the stored chain. This object can then be used as input for the other diagnostic functions in this package.",
      "topics": [
        "tidyChain"
      ]
    },
    {
      "page": "transform_params",
      "title": "Convert between parameterizations of the multivariate skew normal distribution.",
      "topics": [
        "transform_params"
      ]
    }
  ],
  "_rundeps": [
    "cli",
    "coda",
    "cpp11",
    "dplyr",
    "farver",
    "generics",
    "ggplot2",
    "glue",
    "gtable",
    "isoband",
    "labeling",
    "lattice",
    "lifecycle",
    "magrittr",
    "pillar",
    "pkgconfig",
    "purrr",
    "R6",
    "RColorBrewer",
    "Rcpp",
    "RcppArmadillo",
    "RcppEigen",
    "RcppNumerical",
    "rlang",
    "S7",
    "scales",
    "stringi",
    "stringr",
    "tibble",
    "tidyr",
    "tidyselect",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_sysdeps": [
    {
      "shlib": "liblapack",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.26+ds-1ubuntu0.1",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    },
    {
      "shlib": "libblas",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.26+ds-1ubuntu0.1",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    },
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    },
    {
      "shlib": "libgomp",
      "package": "libgomp1",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "openmp",
      "homepage": "http://gcc.gnu.org/",
      "description": "GCC OpenMP (GOMP) support library"
    }
  ],
  "_vignettes": [
    {
      "source": "vignette.html.asis",
      "filename": "vignette.html",
      "title": "COMIX",
      "engine": "R.rsp::asis",
      "headings": [],
      "created": "2022-11-23 15:20:02",
      "modified": "2025-11-12 02:16:23",
      "commits": 2
    }
  ],
  "_score": 2.7634279935629373,
  "_indexed": true,
  "_nocasepkg": "comix",
  "_universes": [
    "shgrky"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.2",
      "date": "2026-05-06T08:19:24.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "ee8564e063f61709b2dc3a0560198469f3168ef6",
      "fileid": "22e354e7d3ba9d0ad23e0ff08e86ec4a54b321e072545b146b23bddd9ca668a4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/shgrky/actions/runs/25423941426"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.2",
      "date": "2026-05-06T08:19:06.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "ee8564e063f61709b2dc3a0560198469f3168ef6",
      "fileid": "d9c5823903c7eda2b498ee0960566b31dd3701bd9eac998f787b72aa9774e5d2",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/shgrky/actions/runs/25423941426"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.2",
      "date": "2026-05-06T08:19:32.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "ee8564e063f61709b2dc3a0560198469f3168ef6",
      "fileid": "b0190276454b185df24babed3fe0711d5bf6e4472a07109b10828691b96f2876",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/shgrky/actions/runs/25423941426"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.2",
      "date": "2026-05-06T08:19:19.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "ee8564e063f61709b2dc3a0560198469f3168ef6",
      "fileid": "0194115aba861499da62397d8a535db3e17b1d34bfc66b53d1434b8b712f32e1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/shgrky/actions/runs/25423941426"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.2",
      "date": "2026-05-06T08:19:15.000Z",
      "arch": "aarch64",
      "commit": "ee8564e063f61709b2dc3a0560198469f3168ef6",
      "fileid": "ed959cdd816c5ece765789df7de753e6b2edb24aadf881680b153d140c6d56d4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/shgrky/actions/runs/25423941426"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.2",
      "date": "2026-05-06T08:22:03.000Z",
      "arch": "x86_64",
      "commit": "ee8564e063f61709b2dc3a0560198469f3168ef6",
      "fileid": "8f49a2ec061c9c5beaf71ad44bce75fcddb299a43899250a8298275fa41013bf",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/shgrky/actions/runs/25423941426"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0.2",
      "date": "2026-05-06T08:19:24.000Z",
      "arch": "aarch64",
      "commit": "ee8564e063f61709b2dc3a0560198469f3168ef6",
      "fileid": "89b2db6d874e3f7ae5a68b2ca2f9674a15fc8a813177644052c4f677b408b1d8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/shgrky/actions/runs/25423941426"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0.2",
      "date": "2026-05-06T08:21:31.000Z",
      "arch": "x86_64",
      "commit": "ee8564e063f61709b2dc3a0560198469f3168ef6",
      "fileid": "20ca457fa3a75f6e180d4d3d3d703c6317805de083d91cba75285663e8ca729d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/shgrky/actions/runs/25423941426"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.2",
      "date": "2026-05-06T08:18:28.000Z",
      "arch": "x86_64",
      "commit": "ee8564e063f61709b2dc3a0560198469f3168ef6",
      "fileid": "70aac2f348dac8d6b35b5039b00d20474d73c57a2b2af3c01a0d9dcc9e8e8a6f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/shgrky/actions/runs/25423941426"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.2",
      "date": "2026-05-06T08:18:26.000Z",
      "arch": "x86_64",
      "commit": "ee8564e063f61709b2dc3a0560198469f3168ef6",
      "fileid": "db5e4cd5314bb631f291353ffa013cee1685244190bc045f605dc8a3dc2b2e82",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/shgrky/actions/runs/25423941426"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.0.2",
      "date": "2026-05-06T08:18:17.000Z",
      "arch": "x86_64",
      "commit": "ee8564e063f61709b2dc3a0560198469f3168ef6",
      "fileid": "8bc273b7f5b53cb829d16eab4b0859be38e94170ccc1a39501c60621b8916644",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/shgrky/actions/runs/25423941426"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.2",
      "date": "2026-05-22T15:44:33.000Z",
      "arch": "emscripten",
      "commit": "ee8564e063f61709b2dc3a0560198469f3168ef6",
      "fileid": "c63aeebc6aee60ea92efccfc09bfbccc48c4b7a1a9d792e95341c74ce3cb8a60",
      "status": "success",
      "buildurl": "https://github.com/r-universe/shgrky/actions/runs/25423941426"
    }
  ]
}